Documentation (VF 2.0)
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  • Documentation
    • Introduction
    • General Features
    • Installation
      • Prerequisities
      • VirtualFlow 2.0
      • VFTools 2.0
      • Uninstallation
    • Backgrounds and Principles
      • Directory Structure
      • Input & Output Databases
      • Job Organization
    • Using VirtualFlow 2.0
      • VirtualFlow 2.0 Commands
      • Preparing the Workflow
      • Starting the Workflow
      • Controlling the Workflow
      • Monitoring the Workflow
      • The Completed Workflow
    • Running VirtualFlow 2.0 in the Cloud
    • Troubleshooting
    • Version History
    • Further Resources
  • VFLP 2.0
    • Introduction
    • Features
    • Installation
      • Prerequisities
      • External Packages
    • Background and Principles
      • Directory Structure
      • Input & Output Databases
    • Using VFLP 2.0
    • Troubleshooting
    • Version History
  • VFVS 2.0
    • Introduction
    • Features
    • Installation
      • External Packages
    • Background and Principles
      • Directory Structure
      • Input & Output Databases
    • Supported docking programs and scoring functions
    • Using VFVS 2.0
      • Preparing the Workflow
      • Monitoring the Workflow
      • The Completed Workflow
    • Troubleshooting
    • Version History
  • VFU 2.0
    • Introduction
    • Features
    • Installation
      • External Packages
    • Background and Principles
      • Directory Structure
      • Input & Output Databases
    • Using VFVS
      • Preparing the Workflow
      • Monitoring the Workflow
      • The Completed Workflow
    • Troubleshooting
    • Version History
  • VFTOOLS 2.0
    • Introduction
    • Installation
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  1. VFU 2.0

Using VFVS

The usage of VFVS is the same as the usage of VirtualFlow in general, which is described here.

In addition for VFVS the input-files folder has to be prepared set up as described here.

All specific options/features which one can activate/configure in VFVS are described in the control file tools/templates/all.ctrl, where the values for all of them can be specified. These options/features include the setting up of the docking scenarios to be used:

  • Number of docking scenarios

  • Docking programs to be used

  • Number of replicas per docking scenario

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Last updated 2 years ago