For the complete documentation index, see llms.txt. This page is also available as Markdown.

Using VFLP

The usage of VFLP is the same as the usage of VirtualFlow in general, which is described here.

All specific options/features which one can activate/configure in VFLP are described in the control file tools/templates/all.ctrl, where the values for all of them can be specified. These options/features include:

  • Neutralization

  • Desalting

  • Tautomerization

  • Protonation

  • 3D Conformer Generation

  • Target Format Generation

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